A DNA-centered explanation of the DNA polymerase translocation mechanism

J.R. Arias-Gonzalez

Scientific Reports 7, 7566 (2017)

 

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein

J.L. Morin, F. Cerron,  J. Jarillo, E. Beltran-Heredia, G. Ciesielski, J.R. Arias-Gonzalez, L. Kaguni, F.J. Cao and B. Ibarra

Nucleic Acids Research 45, 7237-7248 (2017)

 

Luminescence Dynamics of Silica-Encapsulated Quantum Dots During Optical Trapping

H. Rodríguez-Rodríguez, M. Acebrón, B. H. Juárez and J.R. Arias-Gonzalez

Journal of Physical Chemistry C 121, 10124-10130 (2017)I

 

nformation management in DNA replication modeled by directional stochastic chains with memory

J.R. Arias-Gonzalez

Journal of Chemical Physics 145, 185103 (2016)

 

Role of the Central Cations in the Mechanical Unfolding of DNA y RNA G-Quadruplexes

A.E. Bergues-Pupo, J.R. Arias-Gonzalez, M.C. Morón, A. Fiasconaro and F. Falo

Nucleic Acids Research 43:7638-7647 (2015)

 

A Temperature-jump Optical Trap for Single Molecule Manipulation

S. de Lorenzo, M. Ribezzi-Crivellari, J.R. Arias-Gonzalez, S. B. Smith and F. Ritort

Biophysical Journal 108:2854-2864 (2015)

 

Mechano-chemical Kinetics of DNA Replication: Identification of the Translocation Step of a Replicative

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas and B. Ibarra

Nucleic Acids Research 43, 3643–3652 (2015)

 

Single-molecule Portrait of DNA and RNA Double Helices

J.R. Arias-Gonzalez

Integrative biology 6, 904-925 (2014)

 

Laser Heating Tunability by Off-Resonant Irradiation of Gold Nanoparticles

S.Hormeño, P.Gregorio-Godoy, J.Perez-Juste L.M.Liz-Marzán, B. H. Juarez and J.R. Arias-Gonzalez

Small 10, 376-384 (2014)

 

Mechanical Unfolding of Long Human Telomeric RNA (TERRA)

M. Garavis, R. Bocanegra, E. Herrero-Galán, C. González, A.Villasante and J.R. Arias-Gonzalez

Chemical communications 49, 6397-6399 (2013)

 

Mechanical Identities of RNA and DNA Double Helices Unveiled at the Single-Molecule Level

E. Herrero-Galán, M.E. Fuentes-Pérez, C. Carrasco, J.M. Valpuesta, J.L. Carrascosa, F. Moreno-Herrero and J.R. Arias-Gonzalez

J. Am. Chem. Soc. 135, 122-131 (2013)

 

Optical Tweezers to Study Viruses [Book chapter in Structural and Physical Virology]

J.R. Arias-Gonzalez

Springer, 2013

 

Entropy Involved in Fidelity of DNA Replication

J.R. Arias-Gonzalez

PLoS ONE 7(8): e42272 (2012)

 

Active DNA Unwinding Dynamics During Processive DNA Replication

J.A. Morin, FJ. Cao, JM. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas and B. Ibarra

Proceedings of the National Academic of Sciences USA 109(21): 8115-20 (2012)

 

Mechanical Stability of Low-humidity Single DNA Molecules

S. Hormeño, B. Ibarra B, J.M. Valpuesta, J.L. Carrascosa and J.R. Arias-Gonzalez

Biopolymers 97(4): 199-208 (2012)

 

Plasmon-Exciton Interactions on Single Thermoresponsive Platforms

S. Hormeño, N.G. Bastús, A. Pietsch, H. Weller, J.R. Arias-Gonzalez and B.H. Juárez

Nano Lett. 11, 4742–4747 (2011)

 

Condensation Prevails over B-A Transition in the Structure of DNA at Low Humidity

S. Hormeño, F. Moreno-Herrero, B. Ibarra, J.L. Carrascosa, J.M. Valpuesta and J.R. Arias-Gonzalez

Biophys J. 100, 2006-2015 (2011)

 

Mechanical Properties of High GC-content DNA with A-type Base-stacking

S. Hormeño, B. Ibarra, J.L. Carrascosa, J.M. Valpuesta, F. Moreno-Herrero and J.R. Arias-Gonzalez

Biophys J. 100, 1996-2005 (2011)

 

Single Centrosome Manipulation Reveals its Electric Charge and Associated Dynamic Structure

S. Hormeño, B. Ibarra, F. Chichón, K. Habermann , B. Lange , JM. Valpuesta, JL. Carrascosa and J.R. Arias-Gonzalez

Biophys J. 97: 1022-1030 (2009)

 

Exploring Mechanochemical Processes in the Cell with Optical Tweezers

S. Hormeño and J.R. Arias-Gonzalez

Biol. Cell 98, 679-695 (2006)

 

Cold Phase Transition of DNA in Aqueous Solution

H. Mao, J.R. Arias-Gonzalez, I. Tinoco and C. Bustamante

Biophys J. 88, 347A-348A Part 2, Suppl. S. (2005)

 

Temperature Control Methods in a Laser Tweezers System

H. Mao, J.R. Arias-Gonzalez, S. Smith, I. Tinoco and C. Bustamante

Biophys J.,89, 1308-1316 (2005)

 

Theory of Forces Induced by Evanescent Fields

M. Nieto-Vesperinas and J.R. Arias-Gonzalez

arXiv:1102.1613v1 [cond-mat.other]

 

Single-molecule Spontaneous Emission Close to Absorbing Nanostructures

M. Thomas, J.-J. Greffet, R. Carminati and J.R. Arias-Gonzalez

Appl. Phys. Lett. 85, 3863-3865 (2004)

 

Optical Forces on Small Particles: Attractive and Repulsive Nature and Plasmon Resonance Conditions

J.R. Arias-Gonzalez and M. Nieto-Vesperinas

J. Opt. Soc. Am. A20, 1201-1209 (2003)

 

Radiation Pressure over Dielectric and Metallic Nanocylinders on Surfaces: Polarization Dependence and Plasmon Resonance Conditions

J.R. Arias-Gonzalez and M. Nieto-Vesperinas

Opt. Lett. 27, 2149-2151 (2002)

 

Modeling Photonic-force Microscopy with Metallic Particles under Plasmon Eigenmode Excitation

J.R. Arias-Gonzalez, M. Nieto-Vesperinas and M. Lester

Phys. Rev. B 65, 115402 (2002)

 

Fundamentals and Model of Photonic-force Microscopy

M. Lester, J.R. Arias-Gonzalez and M. Nieto-Vesperinas

Opt. Lett. 26, 707-709 (2001)

 

Resonant Near-field Eigenmodes of Nanocylinders on Flat Surfaces under both Homogeneous and Inhomogeneous Lightwave Excitation

J.R. Arias-Gonzalez and M. Nieto-Vesperinas

J. Opt. Soc. Am. A 18, 657-665 (2001)

 

Nanoparticles on Surfaces: Resonances and Optical Forces [Proceedings, pdf]

J.R. Arias-Gonzalez, P.C. Chaumet and M. Nieto-Vesperinas

in Nanometre Scale Science and Technology, M. Allegrini, N. Garcia and O. Marti

IOS Press. Proc. Int. Sch. E. Fermi (2001)

 

Near Field Distributions of Resonant Modes in Small Dielectric Objects on flat Surfaces

 J.R. Arias-Gonzalez and M. Nieto-Vesperinas

Opt. Lett. 25, 782-784 (2000)

 

Morphology-dependent Resonances in the Scattering of Electromagnetic Waves from an Object Buried beneath a Plane or a Random Rough Surface

J.R. Arias-Gonzalez, M. Nieto-Vesperinas and A. Madrazo

Journal of the Optical Society of America A 16, 2928-2934 (1999)

 

Polarization Effects in the Scattering of Electromagnetic Waves by an Object Beneath a Random Rough Surface

A. Madrazo, J.R. Arias-Gonzalez and M. Nieto-Vesperinas

Optics Communications 162, 91-98 (1999)