A DNA-centered explanation of the DNA polymerase translocation mechanism

J.R. Arias-Gonzalez

Scientific Reports 7, 7566 (2017)

 

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein

J.L. Morin, F. Cerron,  J. Jarillo, E. Beltran-Heredia, G. Ciesielski, J.R. Arias-Gonzalez, L. Kaguni, F.J. Cao y B. Ibarra

Nucleic Acids Research 45, 7237-7248 (2017)

 

Luminescence Dynamics of Silica-Encapsulated Quantum Dots During Optical Trapping

H. Rodríguez-Rodríguez, M. Acebrón, B. H. Juárez y J.R. Arias-Gonzalez

Journal of Physical Chemistry C 121, 10124-10130 (2017)

 

Information management in DNA replication modeled by directional stochastic chains with memory

J.R. Arias-Gonzalez

Journal of Chemical Physics 145, 185103 (2016)

 

Role of the Central Cations in the Mechanical Unfolding of DNA y RNA G-Quadruplexes

A.E. Bergues-Pupo, J.R. Arias-Gonzalez, M.C. Morón, A. Fiasconaro y F. Falo

Nucleic Acids Research 43:7638-7647 (2015)

 

A Temperature-jump Optical Trap for Single Molecule Manipulation

S. de Lorenzo, M. Ribezzi-Crivellari, J.R. Arias-Gonzalez, S. B. Smith y F. Ritort

Biophysical Journal 108:2854-2864 (2015)

 

Mechano-chemical Kinetics of DNA Replication: Identification of the Translocation Step of a Replicative

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas y B. Ibarra

Nucleic Acids Research 43, 3643–3652 (2015)

 

Single-molecule Portrait of DNA and RNA Double Helices

J.R. Arias-Gonzalez

Integrative biology 6, 904-925 (2014)

 

Laser Heating Tunability by Off-Resonant Irradiation of Gold Nanoparticles

S. Hormeño, P. Gregorio-Godoy, J. Perez-Juste L.M. Liz-Marzán, B. H. Juarez y J.R. Arias-Gonzalez

Small 10, 376-384 (2014)

 

Mechanical Unfolding of Long Human Telomeric RNA (TERRA)

M. Garavis, R. Bocanegra, E. Herrero-Galán, C. González, A.Villasante y J.R. Arias-Gonzalez

Chemical communications 49, 6397-6399 (2013)

 

Mechanical Identities of RNA and DNA Double Helices Unveiled at the Single-Molecule Level

E. Herrero-Galán, M.E. Fuentes-Pérez, C. Carrasco, J.M. Valpuesta, J.L. Carrascosa, F. Moreno-Herrero y J.R. Arias-Gonzalez

J. Am. Chem. Soc. 135, 122-131 (2013)

 

Optical Tweezers to Study Viruses [Book chapter in Structural and Physical Virology]

J.R. Arias-Gonzalez

Springer, 2013

 

Entropy Involved in Fidelity of DNA Replication

J.R. Arias-Gonzalez

PLoS ONE 7(8): e42272 (2012)

 

Active DNA Unwinding Dynamics During Processive DNA Replication

J.A. Morin, FJ. Cao, JM. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas y B. Ibarra

Proceedings of the National Academic of Sciences USA 109(21): 8115-20 (2012)

 

Mechanical Stability of Low-humidity Single DNA Molecules

S. Hormeño, B. Ibarra B, J.M. Valpuesta, J.L. Carrascosa, J.R. Arias-Gonzalez

Biopolymers 97(4): 199-208 (2012)

 

Plasmon-Exciton Interactions on Single Thermoresponsive Platforms

S. Hormeño, N.G. Bastús, A. Pietsch, H. Weller, J.R. Arias-Gonzalez y B.H. Juárez

Nano Lett. 11, 4742–4747 (2011)

 

Condensation Prevails over B-A Transition in the Structure of DNA at Low Humidity

S. Hormeño, F. Moreno-Herrero, B. Ibarra, J.L. Carrascosa, J.M. Valpuesta y J.R. Arias-Gonzalez

Biophys J. 100, 2006-2015 (2011)

 

Mechanical Properties of High GC-content DNA with A-type Base-stacking

S. Hormeño, B. Ibarra, J.L. Carrascosa, J.M. Valpuesta, F. Moreno-Herrero y J.R. Arias-Gonzalez

Biophys J. 100, 1996-2005 (2011)

 

Single Centrosome Manipulation Reveals its Electric Charge and Associated Dynamic Structure

S. Hormeño, B. Ibarra, F. Chichón, K. Habermann , B. Lange , J.M. Valpuesta, J.L. Carrascosa y J.R. Arias-Gonzalez

Biophys J. 97: 1022-1030 (2009)

 

Exploring Mechanochemical Processes in the Cell with Optical Tweezers

S. Hormeño y J.R. Arias-Gonzalez

Biol. Cell 98, 679-695 (2006)

 

Cold Phase Transition of DNA in Aqueous Solution

H. Mao, J.R. Arias-González, I. Tinoco y C. Bustamante

Biophys J. 88, 347A-348A Part 2, Suppl. S. (2005)

 

Temperature Control Methods in a Laser Tweezers System

H. Mao, J.R. Arias-Gonzalez, S. Smith, I. Tinoco y C. Bustamante

Biophys J.,89, 1308-1316 (2005)

 

Theory of Forces Induced by Evanescent Fields

M. Nieto-Vesperinas y J.R. Arias-González

arXiv:1102.1613v1 [cond-mat.other]

 

Single-molecule Spontaneous Emission Close to Absorbing Nanostructures

M. Thomas, J.-J. Greffet, R. Carminati, y J.R. Arias-Gonzalez

Appl. Phys. Lett. 85, 3863-3865 (2004)

 

Optical Forces on Small Particles: Attractive and Repulsive Nature and Plasmon Resonance Conditions

J.R. Arias-Gonzalez y M. Nieto-Vesperinas

J. Opt. Soc. Am. A20, 1201-1209 (2003)

 

Radiation Pressure over Dielectric and Metallic Nanocylinders on Surfaces: Polarization Dependence and Plasmon Resonance Conditions

J.R. Arias-Gonzalez y M. Nieto-Vesperinas

Opt. Lett. 27, 2149-2151 (2002)

 

Modeling Photonic-force Microscopy with Metallic Particles under Plasmon Eigenmode Excitation

J.R. Arias-Gonzalez, M. Nieto-Vesperinas y M. Lester

Phys. Rev. B 65, 115402 (2002)

 

Fundamentals and Model of Photonic-force Microscopy

M. Lester, J.R. Arias-Gonzalez y M. Nieto-Vesperinas

Opt. Lett. 26, 707-709 (2001)

 

Resonant Near-field Eigenmodes of Nanocylinders on Flat Surfaces under both Homogeneous and Inhomogeneous Lightwave Excitation

J.R. Arias-Gonzalez y M. Nieto-Vesperinas

J. Opt. Soc. Am. A 18, 657-665 (2001)

 

Nanoparticles on Surfaces: Resonances and Optical Forces [Proceedings, pdf]

J.R. Arias-Gonzalez, P.C. Chaumet y M. Nieto-Vesperinas

en Nanometre Scale Science and Technology, M. Allegrini, N. Garcia y O. Marti

IOS Press. Proc. Int. Sch. E. Fermi (2001)

 

Near Field Distributions of Resonant Modes in Small Dielectric Objects on flat Surfaces

 J.R. Arias-Gonzalez y M. Nieto-Vesperinas

Opt. Lett. 25, 782-784 (2000)

 

Morphology-dependent Resonances in the Scattering of Electromagnetic Waves from an Object Buried beneath a Plane or a Random Rough Surface

J.R. Arias-Gonzalez, M. Nieto-Vesperinas y A. Madrazo

Journal of the Optical Society of America A 16, 2928-2934 (1999)

 

Polarization Effects in the Scattering of Electromagnetic Waves by an Object Beneath a Random Rough Surface

A. Madrazo, J.R. Arias-Gonzalez y M. Nieto-Vesperinas

Optics Communications 162, 91-98 (1999)